NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209149_1035113

Scaffold Ga0209149_1035113


Overview

Basic Information
Taxon OID3300027626 Open in IMG/M
Scaffold IDGa0209149_1035113 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4104
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019445Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209149_10351133F019445GAGMTRLTYTEQRDVFGVTTLNNKIYVVYLDLPFIVVYMSQQPYTRLPNISINGLKNPFDIAAGSSCLYLSDPGSAAIWRVKAAGSKVDQWLSGVYALSVSVTSEEKLVLLVGGDKQGSVEERNLTWYVEIQIYSRGAVKETVIKLSRDITCPFCVVMTTRKTFIVSYGVEWHEMNRVCEVDMTGRMLKAFGSAPGEDVGQLNGPCHVSLDDEERVIVADSLNNRVLLLNKQLMLQRVLVTWHPRPGSHDAGYPARLHYDSHSGRLLVGLDKGHLDIYQLRV

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